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UFR Génétique, élevage et reproduction

Échantillon de publications de l’UFR GER

Articles dans des revues à comité de lecture

Vignal A., Boitard S., Thebault N., Dayo G.-K., Yapi-Gnaore V., Youssao I., Berthouly-Salazar C., Pálinkás-Bodzsár N., Guémené D., Thibaud-Nissen F., Warren W.C., Tixier-Boichard M., Rognon X. (accepté) A guinea fowl genome assembly provides new evidence on evolution following domestication and selection in galliformes. Molecular Ecology Resources. First published : 04 April 2019, https://doi.org/10.1111/1755-0998.13017

Wang, S., Strandberg, E., Viklund, A., Windig, J., Malm S., Lewis T., Laloe, D., Leroy, G. (2019). Genetic improvement of canine hip dysplasia through sire selection across countries. The Veterinary Journal, https://doi.org/10.1016/j.tvjl.2019.03.009

Eynard S., Croiseau P., Laloë D., Fritz S., Calus M.P.L., Restoux G. (2018) Which Individuals To Choose To Update the Reference Population ? Minimizing the Loss of Genetic Diversity in Animal Genomic Selection Programs. Genes, Genomes, Genetics. 8:113-121. doi : 10.1534/g3.117.1117.

Wang S., Laloë D., Missant F.-M., Malm S., Lewis T., Verrier E., Strandberg E., Bonnet B., Leroy G. (2018). Breeding policies and management of pedigree dogs in 15 national kennel clubs. The Veterinary Journal, 234, 130-135

Ducrocq V., Laloé D., Swaminathan M., Rognon X., Tixier-Boichard M., Zerjal T. (2018) How to implement genomics for livestock in developing countries : from principles to practice. Frontiers in Genetics, 9, article 251.

Duchesne A, Vaiman A, Castille J, Beauvallet C, Gaignard P, Floriot S, Rodriguez S, Vilotte M, Boulanger L, Passet B, Albaric O, Guillaume F, Boukadiri A, Richard L, Bertaud M, Timsit E, Guatteo R, Jaffrézic F, Calvel P, Helary L, Mahla R, Esquerré D, Péchoux C, Liuu S, Vallat JM, Boichard D, Slama A, Vilotte JL. (2017) Bovine and murine models highlight novel roles for SLC25A46 in mitochondrial dynamics and metabolism, with implications for human and animal health. PLoS Genet. 13(4). https://doi.org/10.1371/journal.pgen.1006597

Leroy G., Danchin-Burge, Palhière I., SanCristobal M., Nédélec Y., Verrier E., Rognon X. (2015) How introgression events shape partition of diversity among breeds : a case study in sheep. Genetics Selection Evolution, 47:48. doi : 10.1186/s12711-015-0131-7.

Heams T. (2015) Can life be engineered ? epistemological roots and blind spots of
Synthetic Biology, Origins - Studies in Biological and Cultural Evolution, BIO Web of
Conferences 4, 00016.

Tixier-Boichard M., Verrier E., Rognon X., Zerjal T. (2015) Farm animal genetic and genomic resources from an agroecological perspective. Frontiers in Genetics 6 (sous presse).

Heams T. (2015) Les Biotechnologies face à l’animal, Revue Semestrielle du Droit
Animalier (2014/2).

Eynard, S. E., Windig, J. J., Leroy, G., Van Binsbergen, R., & Calus, M. P. (2015). The effect of rare alleles on estimated genomic relationships from whole genome sequence data. BMC genetics, 16(1), 1.

Heams T. (2014) Randomness In Biology, Math. Struct. Comput. Sci. e240308

Lauvie A., Couix N., Verrier E. (2014) No development, no conservation : lessons from the conservation of farm animal genetic resources. Society and Natural Resources 27, 1331-1338.

Leroy G., Vernet E., Pautet M.B., Rognon X. (2014) An insight to population structure and gene flows in purebred cats. Journal of Animal Breeding and Genetics, 131, 53-60.

Lambert-Derkimba A., Lauvie A., Verrier E. (2013) How the development of products valorizing local breeds changes breeding goals : examples from French cattle breeds. Animal Genetics Resources 53, 135-140.

Gianola D., Hospital F., Verrier E. (2013) On the contribution of an additive locus to genetic variance when inheritance is multifactorial and implications on the interpretation of GWAS. Theoretical and Applied Genetics 126, 1457-1472.

Pirault P., Danvy S., Verrier E., Leroy G. (2013) Genetic structure and gene flows within horses : a genealogical study at the French population scale. Plos One 8, e61544.

Leroy G., Mary-Huard T., Verrier E., Danvy S., Charvolin E., Danchin-Burge C. (2013) Estimating the effective population size using pedigree data : what method in practice ? Examples in Dog, Sheep, Cattle and Horses. Genetics Selection Evolution 45, 1.

Leroy G., Rognon X. (2012) Assessing the impact of breeding strategies on inherited disorders and genetic diversity in dogs. The Veterinary Journal 194, 343-348.

Danchin-Burge C., Leroy G., Moureaux S., Verrier E. (2012) Evolution of the genetic variability of 8 French dairy cattle breeds assessed by pedigree analysis. Journal of Animal Breeding and Genetics 129, 206-217.

Leroy G., Danchin-Burge C., Palhiere I., Baumung R., Fritz S., Meriaux J.C., Gautier M. (2012) An ABC estimate of pedigree error rate : application in dog, sheep and cattle breeds. Animal Genetics 43, 309-314.

Leroy G., Kayang, B.B., Youssao I.A.K., Yapi-Gnaore C.V., Osei-Amponsah R., Loukou N.E., Fotsa J.C., Benabdeljelil K., Bed’hom B., Tixier-Boichard M., Rognon X. (2012) Gene diversity, agroecological structure and introgression patterns among village chicken populations across north, west and central Africa. BMC Genetics 13, 34.

Bezault E., Balaresque P., Toguyeni A., Fermon Y., Araki H., Baroiller J.F., Rognon X. (2011) Spatial and temporal variation in population genetic structure of wild Nile tilapia (Oreochromis niloticus) across Africa. BMC Genetics 12, 102.

Lauvie A., Audiot A., Couix N., Casabianca F., Brives H., Verrier E. (2011) A key for understanding the diversity of rare breed management setups : between conservation and development. Livestock Science 140, 161-170.

Lambert-Derkimba A., Verrier E., Casabianca F. (2011) Tensions entre ressources génétiques locales et ancrage territorial des produits : la race porcine Corse dans un projet AOP. Economie Rurale 322, 39-49.

Leroy G., Danchin-Burge C., Verrier E. (2011) Impact of the use of cryobank samples in a selected cattle breed : a simulation study. Genetics Selection Evolution 43, 36.

Fotsa J.C., Kamdem D.P., Bordas A., Tixier-Boichard M., Rognon X. (2011) Assessment of the genetic diversity of Cameroon indigenous chickens by the use of microsatellites. Livestock Research for Rural Development 23, 118.

Leroy G. (2011) Genetic diversity, inbreeding and breeding practices in dogs : Results from pedigree analyses. Veterinary Journal 189, 177-182.

Heams T. (2011) Forme et Développement. Critique 67, 109-118.

Leroy G., Baumung R. (2011) Mating practices and the dissemination of genetic disorders in domestic animals, based on the example of dog breeding. Animal Genetics 42, 66-74.

Lambert-Derkimba A., Minéry S., Barbat A., Casabianca F., Verrier E. (2010) Consequences of the inscription of local breeds in protected designation of origin cow cheese specifications for the genetic management of the herds. Animal 12, 1976-1986.

Berthouly-Salazar C., Rognon X., Nhu Van T., Gély M., Vu Chi C., Tixier-Boichard M., Verrier E., Maillard J.C., Michaux J. (2010) Vietnamese chickens : a gate towards Asian genetic diversity. BMC Genetics, 11, 53.

Berthouly C., Maillard J.C., Doan Pham L., Rognon X., Nhu Van T., Bed’Hom B., Leroy G., Hoang Thanh H., Laloë D., Bruneau N., Vu Chi C., N’Guyen Dang V., Verrier E., Rognon X. (2010) Revealing fine scale subpopulations structure in the Vietnamese Hmong cattle breed for conservation purposes. BMC Genetics 11, 45.

Osei-Amponsah R., Kayang B.B., Naazie A., Osei Y.D., Youssao I.A.K., Yapi-Gnaore V.C., Tixier-Boichard M., Rognon X. (2010) Genetic diversity of Forest and Savannah chicken populations of Ghana as estimated by microsatellite markers. Animal Science Journal 81, 297-303.

Berthouly C., Rognon, X., Nhu Van T., Berthouly A., Hoang Thanh H., Bed’Hom B., Laloë D., Vu Chi C., Verrier E., Maillard J.-C. (2010) Genetic and morphometric characterisation of a local Vietnamese Swamp Buffalo population. Journal of Animal Breeding and Genetics, 127, 74-84.

Danchin-Burge C., Palhière I., François D., Bibé B., Leroy G., Verrier E. (2010) Pedigree analysis of seven small French sheep populations and implications for the management of rare breeds. Journal of Animal Science 88, 505-516.

Articles de synthèse

Chiron G., Chapuis H, Tixier-Boichard M., Restoux G., Rognon X., Lubac-Paye S.,Vieaud A., Seigneurin F., Petitjean F., Guémené D. (2018) Quelle stratégie pour une politique de conservation des races locales avicoles ? Innovations Agronomique, 63, 357-371.

Tixier-Boichard M., Bed’hom B., Rognon X. (2011) Chicken domestication : From archeology to genomics. Comptes Rendus Biologies 334, 197-204.

Livres ou chapitres de livres

Heams T. (2019) Infravies, le vivant sans frontières. Seuil, Paris.

Heams T. (2018) Life Engineering in an evolutionary world. In Maurel M.-C. et
Grandcolas Ph (Eds), Biodiversity and Evolution, ISTE Elsevier.

Guintard C. & Leroy G. [Dir.] (2017). Standards, santé et génétique chez le Chien / Standards, Health and Genetics in Dogs, FCI-SCC-SKK.

Heams T. (2015) Variation, in Heams T, Huneman P, Lecointre G, Silberstein M (Eds.) Handbook of Evolutionary Biology In the Sciences, Springer.

Heams T. (2015) Heredity, in Heams T, Huneman P, Lecointre G, Silberstein M (Eds.) Handbook of Evolutionary Biology In the Sciences, Springer.

Heams T. (2015) Synthetic Biology, in Heams T, Huneman P, Lecointre G, Silberstein M
(Eds.) Handbook of Evolutionary Biology In the Sciences, Springer.

Rognon X., Verrier E. (2008) Chapitre III : Suivi et gestion de la variabilité génétique des populations équines. In Danvy S. (éd.) Génétique équine. Haras Nationaux, Paris, 67-87.


Vignal A., Boitard S., Thebault N., Dayo G.-K., Yapi-Gnaore V., Youssao I., Berthouly-Salazar C., Pálinkás-Bodzsár N., Guémené D., Thibaud-Nissen F., Warren W.C., Tixier-Boichard M., Rognon X. (2019) Séquençage du génome entier et diversité génétique de populations sauvages et domestiques de pintade. Treizièmes Journées de la Recherche Avicole et Palmipèdes à Foie Gras, 20-21 mars 2019, Tours. 5 p.

Doublet A.-C. , Croiseau P., Fritz S., Hozé C., Michenet A., Laloë D., Restoux G. (2018) The impact of genomic selection on genetic diversity and genetic gain in French dairy cattle breeds. 69th Annual Meeting of the European Federation of Animal Science, 27-31 août 2018, Dubrovnik, Croatie.

Boitard S., Thebault N., Dayo G.K., Yapi-Gnaore V., Youssao I., Tixier-Boichard M., Warren W., Vignal A., Rognon X. (2018) Guinea fowl domestication : new insights from the first whole genome assembly and the pool sequencing of wild and domestic populations. Second Joint Congress on Evolutionary Biology, 18-22 août 2018, Montpellier, France.

Wang S., Laloe D., Verrier E., Strandberg E., Leroy G. (2018). Management and use of genetic information for health improvement of health in pedigree dogs. 11th World Congress on Genetics Applied to Livestock Production, 11-16 February, Auckland, New Zealand.

Restoux G., Rognon X., Vieaud A., Guémené D., Chiron G., Petitjean F., Seigneurin F., Vasilescu A., Tixier-Boichard M. (2018) Genetic characterization of French local chicken breeds. 11th World Congress on Genetics Applied to Livestock Production, 11–16 février 2018, Aotea Centre Auckland, New Zealand. 8 p.

Restoux G., Verrier E., Heams T., Calvel P., Rognon X. (2018) Online training for a diversified audience : some achievements and some lessons learned. 11th World Congress on Genetics Applied to Livestock Production, 11–16 février 2018, Aotea Centre Auckland, New Zealand. 4 p.

Hospital F., Suez M., Mariadassou M., Nicolas P., Sathyakumar S., Vignal A., Rognon X., Vieaud A., Zerjal T., Tixier-Boichard M. (2018) Phylogeny of the genus Gallus and contribution of the different species to the domestication of chicken. International Plant & Animal Genome XXVI, 14-18 janvier 2018, San Diego, USA .

Mariadassou M., Suez M., Nicolas P., Esquerré D., Vignal A., Hospital F., Rognon X., Vieaud A., Zerjal T., Tixier-Boichard M. (2017) Genomics of Chicken Domestication. 10th European Symposium of Poultry Genetics, 26-28 juin 2017, Saint-Malo, 4 p.

Danchin, C., Doublet, A.C., Restoux G. (2017) The Rambouillet sheep breed : a unique chance to investigate inbreeding at the genome level. 68th Annual Meeting of the European Federation of Animal Science, 28-31 août 2017, Tallin, Estonie.

Vignal A., Thebault N., Boitard S., Yapi-Gnaoré V., Youssao Y., Tixier-Boichard M., Warren W., Rognon X. (2017) Guinea fowl whole genome assembly and application for genetic diversity in African and European populations. 10th European Symposium of Poultry Genetics, 26-28 juin 2017, Saint-Malo. 4 p.

Tholance A., Danchin-Burge C., Moreno-Romieux C., Restoux G. (2016). Inbreeding and its effects on small and isolated sheep population : the case of Rambouillet’s Merino breed. XXIV. Plant and Animal Genome Conference, San Diego, CA, United States.

Tixier-Boichard M., Mariadassou M., Rognon X., Nicolas P., Rodolphe F., Vignal A., Esquerré D., Coville J.-L., Hospital F., Vieaud A., Bed’hom B. (2015) Approche génomique de la domestication du poulet. Onzièmes Journées de la Recherche Avicole et Palmipèdes à Foie Gras, 25-26 mars 2015, Tours. 6 p.

Jiménez-Mena B., Verrier E., Hospital F. (2014) Facing the estimation of effective population size based on molecular markers : comparison of estimators. 10th World Congress on Genetics Applied to Livestock Production, Vancouver, August 17-22, 2014

Danchin-Burge C., François L., Laloë D., Leroy G., Verrier E. (2013) Using the information collected for genetic evaluation to assess the French ruminant and equine within-breed genetic variability. Interbull Bulletin 47, 111-119.

Verrier E., Brives H., Heams T. (2011) Races animales, éleveurs et sociétés : évolution d’un concept et des pratiques de sélection. Colloque CGAAER/OIE, Paris, 29 novembre 2011.

Verrier E., Leroy G., Blouin C., Mériaux J.C., Rognon X., Hospital F. (2010) Estimating the effective size of farm animals populations from Pedigree or molecular data : a case study on two French draught horse breeds. 9th World Congress of Genetics Applied to Livestock Production, Leipzig, August 1-6, 2010. - pdf -

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